In the Mimi (w)o Sumaseba series:

V.1 - Mimi (w)o Sumaseba
Shizuku Tsukishima loves books. One day, she notices that the name Seiji Amasawa appears on the checkout cards of nearly every book she's borrowed! Before she realizes it, her heart is pounding for a boy she's never met... and that's when a mysterious black cat and Shizuku's sense of wonder guide her to an unusual shop--and introduce her to someone she's been curious to meet! Amazing things can happen...when you listen to your heart.

- ShoujoMagic

V.2 - Shiawase na Jikan
Two years into the future, and Shizuku is now preparing for her entrance exams. The second story, "Kikyou no Saku Koko" (The Blooming of the Balloon Flowers), is an unrelated original story. Tsuge Takayuki is a normal college boy, who, one day, sees a girl admiring the flowers in his front yard, and was reminded of a girl who stood by the flowers one year ago, crying in the rain. He falls in love with her, but will her injured heart accept his feelings?

Milk is a young and childish girl living with her aunt in Orange Town. One day, she is told that a guest is coming over to stay with them for a while. Milk's aunt had said that the guest is cute and pretty. Milk, excited about her new friend goes to meet the guest at the fountain. Milk's childhood friend Vitamin and others accompany her at this time. Through an unforseen event, Milk arrives late at the fountain with the guest nowhere to be seen. They did however, find a handsome young boy asking for directions to Orange Town.

From VIZ:

Seiji Sawamura is the toughest seventeen-year-old in town, feared by all for his fighting prowess and his deadly "devil's right hand." But at heart, Seiji is a softy, and all he wants is an end to his seventeen-year history of being a lonely single guy. Unfortunately his tough-guy reputation only serves to decrease his popularity with the ladies. But what happens when one day, his right hand becomes a girl?!

Everyone lies when they are young, but the lie Kobayashi Hiro told when he was just six haunts him daily to this day. He claimed that he was abducted by aliens, and, even though it was quickly discovered it was a hoax, thanks to national attention, the town became a hotspot and tourist stop for UFO fanatics.

So when the beautiful Yamada Meteor transfers to Hiro’s school, claiming that she is an alien and Hiro is the only one that can save the planet from destruction, he thinks that the whole thing’s a prank. He quickly learns that she isn’t joking.

Meteor is here to test if humanity is worth saving from the monstrous asteroids headed toward Earth. To prove humanity’s worth to the universe, Hiro must complete the assigned missions, even if they are a little perverted.

Thirty years ago a series of meteorites rained down on Earth, destroying much of civilization. Decades later, pockets of humanity are beginning to reemerge, but many of the children who have been born after the crisis have been mutated by radiation from the meteorites. They are called the Meteorite Breed.

Tooi, a fourteen years old kid that eats a lot, is one of the Meteorite Breed. But he is a rare one...

Blogger, Shio, meets up with some friends he met online through his blog. He is going to meet Miya (supposedly female), a blogger he hasn't met yet. He is surprised to find out that Miya is a very tall man who has a very calming effect on others.

From Shoujo Crusade:

A boy who only loves black and a girl who enjoys all the colors. What will happen when they clash?

Satomi High's Football Club members are bunch of weirdos, there's a former yankee (delinquent), a former Hikikamori, one short-tempered guy and on top of that their captain is a 'chibi' (shorty), who looks more like primary schooler than a 2nd year high schooler, but don't be fooled - despite the fact of being all-freshman brand new team in a brand new high school, those guys made it to the best 4 of Chiba Prefecture last year! Their newest recruit is an almost 2m high guy, who is surprisingly bad at headings (despite having a height advantage). Fortunately the chibi-captain notices his potential as an attacking midfielder... How far can this team possibly go in this year's tournament? (From:MyAnimelist.net)

Masakichi-kun is a first year high schooler working as an errand boy for the upperclassmen bullies. One day he slams into a female member of a biker gang, touching her breasts... She saves him from a falling steel frame from a construction yard and leaves without saying anything... Later on, she suddenly shows up at his school causing a ruckus. What will happen to Masakichi-kun?

Kogane is a socially clueless, glasses-wearing girl who works at a convenience store. She has a huge crush on her manager, Fuuta, but he doesn't seem to return her feelings at all. Luckily, Kogane has a little sister, Akane, who is much more fashion conscious and adept at social situations. Akane is determined to help her awkward big sister get the boy she wants!

Compliation of short stories:

• Megane ni Koishite
Yuzuko who loves glasses breaks the class' fearsome Maki-kun's contacts. When he has to wear glasses for the time being, he turns out to be an ideal glasses boy to be loved! Preference = Glasses Crush & Benefit = Can buy new contacts, Maki-kun enters the [Glasses Boy Contest], but Yuzuko...?!

• Yuki no Enbukyoku (Waltz)
Michiru finds out she's the granddaughter of a rich man and her butler is VERY attractive...

• Sekai no Owari ni Dakishimete
A romance set during Pompeii...

• Kawaii Hito
Math teacher, Suruga-sensei has a secret relationship with his student, Kimura Hatoko! However, Yuzuko knows his secret... But is it really what he thinks it is?!

From Aerandria Scans:
“Cause trouble in Shibuya, and I’ll hear everything.”
Chiryu Mamoru is the former Shibuya Gang King (Crime Boss). Now he’s protecting the streets of Shibuya as the youngest lawyer in history. With an ear piercing as his lawyer badge and law as his weapon, he works to destroy the nest of evil and to protect the people. Introducing one lawyer’s all consuming fight against heresy!
“You can’t protect anything with violence… that’s why I choose the law!”

Mashiro and Natsume are childhood friends. Mashiro has a complex about being too tall and 3 years older than Natsume. She has long loved Natsume, but it's difficult for her to convey her feelings to him. A man who looks just like a grown-up Natsume appears before Mashiro. The man who resembles Natsume confesses unexpectedly that he has long loved Mashiro. Who on earth is he?!

4. Atashi no Okiniiri (My Love)
After dating a player who had another girlfriend, Rina decides to become a player also and immediately finds someone willing to be her lifelong toy.

The story revolves around Takumi Tsuzuki, a boy who lives with his older "sister" Otome, although the two have no blood ties between them. Otome manages a run-down confectionery store called Stray Cats. One day, Otome picks up a mysterious beautiful girl off the streets.

A collection of stories:

1. Hakoniwa (The Miniature Garden)

2. Doll

3. Gogatsu no Kiseki (May Miracle)
College freshman, Seiji Murayama, is living on his own for the first time until an enormous cyborg from his past appears in his closet.

4. Himerareta Hana (Hidden Flowers)

5. Kimi yo Shiru ya Minami no Kuni (I Know You're in South Country)
A beautiful traveler comes to a South Country and meets the grotesque natives. There he finds love, friendship, and ugly unicorns.

Mato-chan is a 3rd grade elementary school girl that likes bugs sooo much. Take a look at Mato-chan and friends' daily life!

A collection of one-shots:

Vol 1:
Magician
Fairy Tale
Cocona
Plue's Adventures Pt. II

Vol 2:
Bad Boys Song
Magic Party
Christmas Hearts
Fighting Group Mixture

From Intercross:

Hatsune is a useless, devious girl. One day, Hatsune's father decides to make her live with a fastidious boy! Kaede-kun, being fed up with how unladylike Hatsune is, decides to become her tutor.

A sea prince wishes to have Christmas under the sea. Can his butler make his dream come true?

Tomo Fukuya loves taking pictures of himself while cross-dressing, and he's gained some notoriety among his schoolmates because of it. He participates in his school's beauty contest during the school festival against his friend Kei Okabe.