From ShoujoMagic:

A low-price, high-quality apartment in the metropolitan area of Tokyo is nothing short of a miracle! It exists, but there's a catch -- tenants must be good-looking and pass an interview by the landlord!? This is a love comedy about what happens when the beautiful people are all gathered under one roof!

From CPM:

An alien armada from Jupiter has amassed enough power to destroy all of Earth's defences. Earth's final hope lies in the Space Battleship Nadesico, a ship created using recently discovered extraterrestrial technology.
Can the Nadesico's rag-tag crew overcome their idiosyncrasies and defeat the alien fleet, or will Earth's last hope be lost?

The manga differs greatly from the anime

Hirayama, an aspiring manga writer, is thrilled to be chosen as a last minute replacement assistant for a celebrated manga writer he really admires. To his surprise, not only is his boss a woman, but she works semi-nude. In such a distracting environment, Hirayama must find a way to make a good showing of his ability.

Poor Yuzu is an orphan who's too clumsy to hold a job. She's reduced to living in a playground -- until a handsome stranger named Hassaku informs her that she's heir to a fortune, and whisks her into a world of wealth, power, and more hot suitors than she can shake a scepter at! But there's a catch: Hassaku must turn this klutz into a lady of refinement, or Yuzu will lose everything!

Also included in this manga is an extra story called Naughty Honey:
"The boyfriend I made in college cheated on me."

When she caught her boyfriend sleeping with another woman, Kayako Ueno broke his front teeth... and it will cost her a hundred-thousand yen to repair them. So she takes a part-time job as a home tutor-- for playboy Haru-kun.

The fate of the world rests on one man's shoulders. Or, to put it more exactly, it rests on his balls.
In a freak sealing accident the Queen of Terror is sealed into Satou Kohta's balls, thus preventing her from reigning destruction on the world. However, a lesser devil, the incompetent horned tsundere loli Elyse, has been sent up to Earth to release the Queen at all costs. The only way to do so is to make Kohta ejaculate, and Elyse only has 30 days to do it.
The battle for mankind has begun, in Kohta's pants.

From Broccoli:
When Kaya runs into trouble one day, it’s not a knight in shining armor, but her stuffed animals that come to her rescue. It may sound crazy, but Kaya isn’t pretending: she loves her stuffed animals so much, they come to life and turn into people! Plushies come in all different shapes and sizes, and so do their hearts—whereas some are nice, there are others who are not so kind.

From CMX:

High school student Yukari Fujimaru knows a potential star when she sees one…because she sees the special "aura" they give off, in the form of angelic wings. Yukari's fellow student, the beautiful Ryoko Katsuragi, has a small pair of wings herself, and is one of these aspiring talents. She's so talented, in fact, that no one even knows that "she" is actually a boy in disguise. Now, to make her own down-to-earth dream come true, Yukari must help her new friend become a star.

From Entropy:
Sawa applies to Heaven’s Wing Academy, thinking she would look cute in the uniform. But she never expected the academy to be a previously all-boys’ school! And the head honcho of the school, the class president himself—Ran—doesn’t seem to like her one bit and takes no pains to hide it. At first, adjusting to life at the academy is tough. Sawa is bullied and teased, and the boys in the class even throw her new shoes in the water. While attempting to retrieve her shoes, she falls into the water and is unexpectedly saved by Ran, who up until this point has made her life hell. The newfound gentleness in Ran intrigues her—and she finds herself falling for him. What will her days be like for the rest of her school life?


*Includes the following side stories called:

- Endless March in vol. 1
Yayoi, a student studying piano, can't get along with her teacher, Terawaki. But as they continue the lessons, both of them will overcome their obstacles.

- Home, Sweet Home in vol. 4
A short story about Sawa's parents and how they got together.

- Brown Garden Eki in vol. 6
A young girl named Kuro lives at the Brown Garden station. She has always lived in the station, collecting stories from travelers and then telling them to others. But why does she remain at the station?

From An Endless Story:

After the death of her father, Sakura decides to follow her father's last wishes and move into Sakura Dormitory and attend Sakura High. However, on her way there, she's approached by a stranger who mistakens her for someone else and steals her first kiss!

From Tokyopop:
On a world with no women, the surviving men have reintroduced the female in the form of an android. Called Marionettes, they are built to serve men and are limited in their interactions with humans. That is until a poor boy named Otaru Mamiya encounters a Marionette named Lime. Lime is a Saber model with a special circuit that gives her emotions. When Otaru awakens two more Saber Marionettes, his life as an 'average' man quickly becomes as extraordinary as the lives of his eager, busty new friends.

The story revolves around Tsukune Aono, a boy who accidentally gets enrolled in a school inhabited by monsters and demons. He quickly befriends Moka Akashiya, a vampire who soon develops an obsession with his blood, and later meets other girls who soon take a romantic liking to him.

From Del Rey:

Everybody at Seiyo Elementary thinks that stylish and super cool Amu has it all: But nobody knows the real Amu, a shy girl who wishes she had the courage to truly be herself. Changing Amu's life is going to take more than wishes and dreams - it's going to take a little magic!
One morning, Amu finds a surprise in her bed: three strange little eggs. Each egg contains a Guardian Character, an angel-like being who can give her the power to be someone new. With the help of her Guardian Characters, Amu is about to discover that her true self is even more amazing than she ever dreamed.

Contains the side story Shugo Chara! Encore! in volume 12.

Shugo Chara! was awarded the 2008 Kodansha Manga Award for best children's manga.

Midori Yamate is a 15 year-old girl and is very much a tomboy. When she was young, Midori meets a boy called Tsukasa Hino, who came to the island she lives on for a holiday. He teaches her to play soccer and she falls in love with the sport. Midori is inspired by Tsukasa and continues to play soccer in hopes that they would meet again someday. When they do meet again Tsukasa does something unforgivable. Determined to defeat Tsukasa on the soccer field Midori enrolls in an all boy high school.

Contains a short story of 2 chapters called Shounen x Cinderella in the 8th and 9th Volumes:
Sakuragi Azuma has a secret that no one should ever know about: he's actually Momo Kasuka, an up and coming female model! While shooting a new drama, he meets another arising newcomer named Yui Hazuki, and things are going to get heated!

Welcome to the cursed island of Shina Dark. This island is called home by the dark lord Exoda C. Claw AKA Satan. He's as powerful a being as you could ever hope to meet. Feared and hated the world over for the infinite amount of atrocities he's committed. He's.....actually a really nice guy who just wants to chill out around the castle and relax... After a month long nap he awakens to find that the rest of the world has made up another ridiculous rumor and blown it way out of proportion and that has caused his little island to be crowded with a thousand beautiful girls meant to be his mistresses/sacrifices. Worse yet is that since they have set foot on his island they are all believed to be cursed and are now shunned by their homelands. What’s a couch potato Satan to do with 1000 women who wont leave? Who can say?

From Operation Boredom:

During an eclipse, demon Lord Exoda. C. Crown was revived. He is supposed to bring chaos and destruction to the world. The world is panicking, and as a sacrifice to the demon lord, they decide to send 1,000 girls to the demonic island, Shina Dark. However, in Shina Dark, all the legends are lies. Exoda does not sleep with 10 girls a night, and keep the others prisoners. He does not lust for girls, he does not want to cause mass destruction - he simply wants to live in peace. So when 1,000 girls suddenly show up in his island and refuse to leave, what will happen to Exoda, who simply wants to be left alone?

Tenchi Masaki is a shy high school boy, yet honest and hard working. He looks forward to living a basic humble life, taking over his grandfather's shrine. However, nothing is ever as simple as one would want, as Tenchi soon learns. A series of events beginning with the sudden appearance of Ryoko, the space pirate, creates madness in his home. Now he must figure out how to juggle 2 princess's, a space pirate, 2 galaxy police, the worlds most intelligent genius and a Rabbit-turned-Spaceship in his quiet country home.

From Intercross & Shoujo Crusade:

1-3. Sorairo Koiiro
Sora somehow ended up in a science class with all boys. Now, she's going to pitch in and help them enjoy school life by showing them her Girl Spirit!!

4. Sakurairo Koiiro

5. Sore demo Yappari Kimi ga Suki
The energetic and cute Rin is actually an otaku! Unexpectedly, she meets a 3-dimensional boy with the same looks as her beloved, Chris-sama! Otaku love in full bloom.

From Viz: The trouble and fun began when ordinary teenager Tenchi Masaki inadvertently released the legendary demon Ryoko from his grandfather's shrine. Turned out Ryoko was actually a marooned space pirate! Since then, she's become Tenchi's unwanted houseguest, attracting a host of other troublemaking alien women: Ayeka, a haughty alien pricess; Sasami, her mischievous little sister; and Washu, Ryoko's mad-scientist "mother." Add Ryo-oh-Ki, an adorable little carrot-eating spaceship, and you've got one full Shinto shrine!

Usagi is the granddaughter of the leader of a prestigious ninja village, but she's such a klutz that she's never made it out of the lower class. Frustrated with Usagi's lack of progress, her grandfather sends her to marry Lord Hanzo with an order to breed many ninja children. But the lord has no interest in her or her childbearing potential!

Last volume includes Promise of the Moon.

At 23 years old, Hina Takato inherited a café and the workers in it from her deceased husband. Although he was much older than her, she loved him a great deal and has vowed to never fall in love again... only, she does.

Saku had a normal life, living with his cousin Kuran and being tormented daily by his childhood friend, Karin. That is, until the day a girl named Kiiro showed up out of nowhere claiming to be Karin's and Saku's daughter from the future. Convinced she will disappear from existence unless Saku and Karin get married, she makes life a lot more complicated for everyone. Things only get crazier when Hiiro, a girl claiming to be Kuran's and Saku's daughter from a different timeline in the future, appears with the goal of getting Saku together with his cousin Kuran. Saku is suddenly faced with a dilemma: whom does he choose as his wife, and which daughter does he save from disappearing into nothing?