Years have passed after Yugi's adventures and now it's Judai "Jaden" Yuki's turn.

Judai "Jaden" Yuki is a new student in the school Duel Academy, a school dedicated to teach duelist the basics and advanced techniques.

Judai is determined to be world's #1 duelist, accepting challenges from his rivals (and friends).

Although the manga is based on the anime, the story is really different and unrelated.